Advances in computational ChIA-PET data analysis
نویسندگان
چکیده
منابع مشابه
ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis
ChIA-PET2 is a versatile and flexible pipeline for analyzing different types of ChIA-PET data from raw sequencing reads to chromatin loops. ChIA-PET2 integrates all steps required for ChIA-PET data analysis, including linker trimming, read alignment, duplicate removal, peak calling and chromatin loop calling. It supports different kinds of ChIA-PET data generated from different ChIA-PET protoco...
متن کاملChIA-PET analysis of transcriptional chromatin interactions.
Long-range chromatin contacts between specific DNA regulatory elements play a pivotal role in gene expression regulation, and a global characterization of these interactions in the 3-dimensional (3D) chromatin structure is imperative in understanding signaling networks and cell states. Chromatin Interaction Analysis using Paired-End Tag sequencing (ChIA-PET) is a method which converts functiona...
متن کاملAdvances in Chia Seed Research
Chia (Salvia hispanica L.) is an edible seed that comes from an annual herbaceous plant, Salvia hispanica L. of mint family (Lamiaceae) (Figure 1). The shape of Chia seed is oval with 1 to 2mm in size, which may be black, grey or black spotted to white in colour. Chia means strength and the tiny seeds have been used as energy booster. Chia seeds can be used in the form of whole seeds, mucilage,...
متن کاملGenome analysis Mango: a bias-correcting ChIA-PET analysis pipeline
Motivation: Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) is an established method for detecting genome-wide looping interactions at high resolution. Current ChIA-PET analysis software packages either fail to correct for non-specific interactions due to genomic proximity or only address a fraction of the steps required for data processing. We present Mango, a complete C...
متن کاملMango: a bias-correcting ChIA-PET analysis pipeline
MOTIVATION Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) is an established method for detecting genome-wide looping interactions at high resolution. Current ChIA-PET analysis software packages either fail to correct for non-specific interactions due to genomic proximity or only address a fraction of the steps required for data processing. We present Mango, a complete Ch...
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ژورنال
عنوان ژورنال: Quantitative Biology
سال: 2016
ISSN: 2095-4689,2095-4697
DOI: 10.1007/s40484-016-0080-3